| The Eelpout Transcriptome
Project
| |
 |
Introduction
This web page contains supplementary data to the eelpout (
Zoarces
viviparus)
transcriptome presented in
Kristiansson
et al. 2009. The generated sequence data have been submitted to NCBI
Short Read Archive
(
SRX002161)
and raw data from the validation micraorray is
available at NCBI Gene Expression Omnibus (
GSE14957,
GPL8222). This project is part
of the EU-funded
BALCOFISH
project.
Contents
| Date |
|
File |
|
Description |
| 2009-08-09 |
|
EeloutTranscripts.fasta.gz | |
FASTA file containing all contigs and singlet after sequence analysis
and assembly. Details are available in Kristiansson
et al. 2009.
|
| 2009-08-09 |
|
FullAnnotation.xls.gz | |
Full annotation for all contigs and singlets. All sequences were BLASTed
against UniProt, five fish genomes and the Danio rerio EST library.
The file contains the best match for each eelpout transcript.
|
| 2009-08-09 |
|
TranscriptInformation.txt.gz | |
This file contains further information regarding the assembled
transcript including length, average coverage, maximum coverage and
predicted direction of transcription.
|
2009-08-09 |
|
EelpoutProbes.txt.gz | |
122351 probes designed for the eelpout microarray. These probes are
50 mers and designed for the Geniom microarray platform. Note that this
files contains both forward and reverse probes (as described in Kristiansson
et al. 2009).
|
Contacts
Contact Erik Kristiansson
(erik.kristiansson@zool.gu.se) for more information.